5e.plantphys.net —  A Companion to Plant Physiology, Fifth Edition by Lincoln Taiz and Eduardo Zeiger Topics 1. Plant Cells Topic 1.1, Model Organisms Topic 1.2, The Plant Kingdom Topic 1.3, Flower Structure and the Angiosperm Life Cycle Topic 1.4, Plant Tissue Systems: Dermal, Ground, and Vascular Topic 1.5, The Structures of Chloroplast Glycosylglycerides Topic 1.6, A Model for the Structure of Nuclear Pores Topic 1.7, The Proteins Involved in Nuclear Import and Export Topic 1.8, Protein Signals Used to Sort Proteins to their Destinations Topic 1.9, SNAREs, Rabs, and Coat Proteins Mediate Vesicle Formation, Fission, and Fusion Topic 1.10, ER Exit Sites (ERES) and Golgi Bodies Are Interconnected Topic 1.11, Specialized Vacuoles in Plant Cells Topic 1.12, Actin-Binding Proteins Regulate Microfilament Growth Topic 1.13, Kinesins Are Associated with Other Microtubules and Chromatin Topic 1.14, Chapter One References 2. Genome Organization and Gene Expression Topic 2.1, Recombination Mapping and Gene Cloning Topic 2.2, Transposon Tagging 3. Water and Plant Cells Topic 3.1, Calculating Capillary Rise Topic 3.2, Calculating Half-Times of Diffusion Topic 3.3, Alternative Conventions for Components of Water Potential Topic 3.4, Temperature and Water Potential Topic 3.5, Can Negative Turgor Pressures Exist in Living Cells? Topic 3.6, Measuring Water Potential Topic 3.7, The Matric Potential Topic 3.8, Wilting and Plasmolysis Topic 3.9, Understanding Hydraulic Conductivity Topic 3.10, Chapter Three References 4. Water Balance of Plants Topic 4.1, Irrigation Topic 4.2, Physical Properties of Soils Topic 4.3, Calculating Velocities of Water Movement in the Xylem and in Living Cells Topic 4.4, Leaf Transpiration and Water Vapor Gradients Topic 4.5, Chapter Four References 5. Mineral Nutrition Topic 5.1, Symptoms of Deficiency in Essential Minerals - Wade Berry, UCLA Topic 5.2, Observing Roots below Ground Topic 5.3, Chapter Five References 6. Solute Transport Topic 6.1, Relating the Membrane Potential to the Distribution of Several Ions across the Membrane: The Goldman Equation Topic 6.2, Patch Clamp Studies in Plant Cells Topic 6.3, Chemiosmosis in Action Topic 6.4, Kinetic Analysis of Multiple Transporter Systems Topic 6.5, ABC Transporters in Plants Topic 6.6, Transport Studies with Isolated Vacuoles and Membrane Vesicles Topic 6.7, Chapter Six References 7. Photosynthesis: The Light Reactions Topic 7.1, Principles of Spectrophotometry Topic 7.2, The Distribution of Chlorophylls and Other Photosynthetic Pigments Topic 7.3, Quantum Yield Topic 7.4, Antagonistic Effects of Light on Cytochrome Oxidation Topic 7.5, Structures of Two Bacterial Reaction Centers Topic 7.6, Midpoint Potentials and Redox Reactions Topic 7.7, Oxygen Evolution Topic 7.8, Photosystem I Topic 7.9, ATP Synthase Topic 7.10, Mode of Action of Some Herbicides Topic 7.11, Chlorophyll Biosynthesis Topic 7.12, Chapter Seven References 8. Photosynthesis: The Carbon Reactions Topic 8.1, CO2 Pumps Topic 8.2, How the Calvin–Benson Cycle Was Elucidated Topic 8.3, Rubisco: A Model Enzyme for Studying Structure and Function Topic 8.4, Energy Demands for Photosynthesis in Land Plants Topic 8.5, Rubisco Activase Topic 8.6, Thioredoxins Topic 8.7, Operation of the C2 Oxidative Photosynthetic Carbon Cycle Topic 8.8, Carbon Dioxide: Some Important Physicochemical Properties Topic 8.9, Three Variations of C4 Metabolism Topic 8.10, Single-Cell C4 Photosynthesis Topic 8.11, Photorespiration in CAM plants Topic 8.12, Glossary of Carbohydrate Biochemistry Topic 8.13, Starch Architecture Topic 8.14, Fructans Topic 8.15, Chloroplast Phosphate Translocators Topic 8.16, Chapter Eight References 9. Photosynthesis: Physiological and Ecological Considerations Topic 9.1, Working with Light Topic 9.2, Heat Dissipation from Leaves: The Bowen Ratio Topic 9.3, The Geographic Distributions of C3 and C4 Plants Topic 9.4, Calculating Important Parameters in Leaf Gas Exchange Topic 9.5, Prehistoric Changes in Atmospheric CO2 Topic 9.6, Projected Future Increases in Atmospheric CO2 Topic 9.7, Using Carbon Isotopes to Detect Adulteration in Foods Topic 9.8, Reconstruction of the Expansion of C4 Taxa Topic 9.9, Chapter Nine References 10. Translocation in the Phloem Topic 10.1, Sieve Elements as the Transport Cells between Sources and Sinks - Susan Dunford, University of Cincinnati Topic 10.2, An Additional Mechanism for Blocking Wounded Sieve Elements in the Legume Family - Susan Dunford, University of Cincinnati Topic 10.3, Sampling Phloem Sap - Susan Dunford, University of Cincinnati Topic 10.4, Nitrogen Transport in the Phloem - Susan Dunford, University of Cincinnati Topic 10.5, Monitoring Traffic on the Sugar Freeway: Sugar Transport Rates in the Phloem - Susan Dunford, University of Cincinnati Topic 10.6, Alternative Views of Pressure Gradient in Sieve Elements: Large or Small Gradients? - Susan Dunford, University of Cincinnati Topic 10.7, Experiments on Phloem Loading - Susan Dunford, University of Cincinnati Topic 10.8, Experiments on Phloem Unloading - Susan Dunford, University of Cincinnati Topic 10.9, Allocation in Source Leaves: The Balance between Starch and Sucrose Synthesis - Susan Dunford, University of Cincinnati Topic 10.10, Partitioning: The Role of Sucrose-Metabolizing Enzymes in Sinks Topic 10.11, Possible Mechanisms Linking Sink Demand and Photosynthetic Rate in Starch Storers - Susan Dunford, University of Cincinnati Topic 10.12, Proteins and RNAs: Signal Molecules in the Phloem Topic 10.13, Chapter Ten References - Susan Dunford, University of Cincinnati 11. Respiration and Lipid Metabolism Topic 11.1, Isolation of Mitochondria - Ian M. Møller, Aarhus University, Denmark; Allan G. Rasmusson, Lund University, Sweden Topic 11.2, The Q-Cycle Explains How Complex III Pumps Protons across the Inner Mitochondrial Membrane - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark Topic 11.3, Multiple Energy Conservation Bypasses in Oxidative Phosphorylation of Plant Mitochondria - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark Topic 11.4, FoF1-ATP Synthases: The World′s Smallest Rotary Motors - Lincoln Taiz, University of California, Santa Cruz, California, USA Topic 11.5, Transport Into and Out of Plant Mitochondria - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark Topic 11.6, The Genetic System in Plant Mitochondria Has Several Special Features - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark Topic 11.7, Does Respiration Reduce Crop Yields? - James N. Siedow, Duke University, North Carolina, USA; Ian M. Møller, Aarhus University, Denmark; Allan G. Rasmusson, Lund University, Sweden Topic 11.8, The Lipid Composition of Membranes Affects the Cell Biology and Physiology of Plants - John Browse, Washington State University Topic 11.9, Utilization of Oil Reserves in Cotyledons - John Browse, Washington State University Topic 11.10, Chapter 11 References 12. Assimilation of Mineral Nutrients Topic 12.1, Development of a Root Nodule Topic 12.2, Measurement of Nitrogen Fixation Topic 12.3, The Synthesis of Methionine Topic 12.4, Oxygenases Topic 12.5, Chapter Twelve References 13. Secondary Metabolites and Plant Defense Topic 13.1, Cutin, Waxes, and Suberin Topic 13.2, Structure of Various Triterpenes Topic 13.3, The Shikimic Acid Pathway Topic 13.4, Detailed Chemical Structure of a Portion of a Lignin Molecule Topic 13.5, Chapter Thirteen References 15. Cell Walls: Structure, Biogenesis, and Expansion Topic 15.1, Plant Cell Walls Play a Major Role in Carbon Flow through Ecosystems Topic 15.2, Terminology for Polysaccharide Chemistry Topic 15.3, Molecular Model for the Synthesis of Cellulose and Other Wall Polysaccharides That Consist of a Disaccharide Repeat Topic 15.4, Matrix Components of the Cell Wall Topic 15.5, The Mechanical Properties of Cell Walls: Studies With Nitella Topic 15.6, Wall Degradation and Plant Defense Topic 15.7, Structure of Biologically Active Oligosaccharins Topic 15.8, Glucanases and Other Hydrolytic Enzymes May Modify the Matrix Topic 15.9, Chapter Fifteen References 16. Growth and Development Topic 16.1, Embryonic Dormancy Topic 16.2, Rice Embryogenesis Topic 16.3, Polarity of Fucus Zygotes Topic 16.4, Azolla Root Development Topic 16.5, Class III HD-Zip Transcription Factors Promote Adaxial Development through a microRNA-Sensitive Mechanism Topic 16.6, During Senescence Photoactive Chlorophyllide Is Converted into a Colorless Chlorophyll Catabolite Topic 16.7, Chapter Sixteen References 17. Phytochrome and Light Control of Plant Development Topic 17.1, Mougeotia: A Chloroplast with a Twist Topic 17.2, Phytochrome and High-Irradiance Responses Topic 17.3, The Origins of Phytochrome as a Bacterial Two-Component Receptor Topic 17.4, Profiling Gene Expression in Plants Topic 17.5, Two-Hybrid Screens and Co-immunoprecipitation Topic 17.6, Phytochrome Effects on Ion Fluxes Topic 17.7, Microarray Analysis of Shade Avoidance Topic 17.8, Chapter Seventeen References 18. Blue-Light Responses: Morphogenesis and Stomatal Movements Topic 18.1, Blue-Light Sensing and Light Gradients Topic 18.2, Guard Cell Osmoregulation and a Blue Light-Activated Metabolic Switch Topic 18.3, The Coleoptile Chloroplast Topic 18.4, Phytochrome-Mediated Responses in Stomata Topic 18.5, Chapter Eighteen References 20. Gibberellins: Regulators of Plant Height and Seed Germination Topic 20.1, Structures of Some Important Gibberellins and Their Precursors, Derivatives, and Inhibitors of Gibberellin Biosynthesis - Valerie Sponsel, Biology Department, University of Texas, San Antonio, Texas, USA Topic 20.2, Commercial Uses of Gibberellins - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA Topic 20.3, Gibberellin Biosynthesis - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA Topic 20.4, Gas Chromatography—Mass Spectrometry of Gibberellins - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA Topic 20.5, Environmental Control of Gibberellin Biosynthesis - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA Topic 20.6, Auxin Can Regulate Gibberellin Biosynthesis - Jocelyn A. Ozga and Dennis M. Reinecke, Plant BioSystems Group, Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada T6G 2P5 Topic 20.7, Negative Regulators of GA Response - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA Topic 20.8, Effects of GAs on Flowering - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA Topic 20.9, DELLA Proteins as Integrators of Multiple Signals - Stephen G. Thomas, Rothamsted Research, Harpenden, United Kingdom Topic 20.10, Chapter Twenty References 21. Cytokinins: Regulators of Cell Division Topic 21.1, Cultured Cells Can Acquire the Ability to Synthesize Cytokinins Topic 21.2, Structures of Some Naturally Occurring Cytokinins Topic 21.3, Various Methods Are Used to Detect and Identify Cytokinins Topic 21.4, The Biologically Active Form of Cytokinin Is the Free Base Topic 21.5, Cytokinins Are Also Present in Some tRNAs in Animal and Plant Cells Topic 21.6, The Structures of Opines Topic 21.7, The Ti Plasmid and Plant Genetic Engineering Topic 21.8, Phylogenetic Tree of IPT genes Topic 21.9, A Root-Derived Hormone, Strigolactone, Is Involved in the Suppression of Branching in Shoots Topic 21.10, Cytokinin Can Promote Light-Mediated Development Topic 21.11, Cytokinins Promote Cell Expansion and Greening in Cotyledons Topic 21.12, Cytokinins Interact with Elements of the Circadian Clock Topic 21.13, Chapter Twenty-One References 22. Ethylene: The Gaseous Hormone Topic 22.1, Ethylene in the Environment Arises Biotically and Abiotically Topic 22.2, Ethylene Readily Undergoes Oxidation Topic 22.3, Ethylene Can Be Measured by Gas Chromatography Topic 22.4, Cloning of the Gene That Encodes ACC Synthase Topic 22.5, Cloning of the Gene That Encodes ACC Oxidase Topic 22.6, Ethylene Binding to ETR1 and Seedling Response to Ethylene Topic 22.7, Conservation of Ethylene Signaling Components in Other Plant Species Topic 22.8, ACC Synthase Gene Expression and Biotechnology Topic 22.9, The hookless Mutation Alters the Pattern of Auxin Gene Expression Topic 22.10, Ethylene Inhibits the Formation of Nitrogen-Fixing Root Nodules in Legumes Topic 22.11, Ethylene Biosynthesis Can Be Blocked with Anti-Sense DNA Topic 22.12, Abscission and the Dawn of Agriculture Topic 22.13, Specific Inhibitors of Ethylene Biosynthesis Are Used Commercially to Preserve Cut Flowers Topic 22.14, Chapter Twenty-Two References 23. Abscisic Acid: A Seed Maturation and Stress-Response Hormone Topic 23.1, The Structure Of Lunularic Acid from Liverworts Topic 23.2, ABA May Be an Ancient Stress Signal Topic 23.3, Structural Requirements for Biological Activity of Abscisic Acid Topic 23.4, The Bioassay of ABA Topic 23.5, Evidence for Both Extracellular and Intracellular ABA Receptors Topic 23.6, The Existence of G Protein-Coupled ABA Receptors Is Still Unresolved Topic 23.7, The Yeast Two-Hybrid System Topic 23.8, Yellow Cameleon: A Noninvasive Tool for Measuring Intracellular Calcium Topic 23.9, Phosphatidic Acid May Stimulate Sphingosine-1-Phosphate Production Topic 23.10, The ABA Signal Transduction Pathway Includes Several Protein Kinases Topic 23.11, The ERA1 and ABH Genes Code for Negative Regulators of the The ABA Response Topic 23.12, Promoter Elements That Regulate ABA Induction of Gene Expression Topic 23.13, Regulatory Proteins Implicated in ABA-Stimulated Gene Transcription Topic 23.14, ABA Gene Expression Can Also Be Regulated by mRNA Processing and Stability Topic 23.15, ABA May Play a Role in Plant Pathogen Responses Topic 23.16, Proteins Required for Desiccation Tolerance Topic 23.17, The Types of Coat-Imposed Seed Dormancy Topic 23.18, Types of Seed Dormancy and the Roles of Environmental Factors Topic 23.19, The Longevity of Seeds Topic 23.20, Genetic Mapping Of Dormancy: Quantitative Trait Locus (QTL) Scoring of Vegetative Dormancy Combined with a Candidate Gene Approach Topic 23.21, ABA-Induced Senescence and Ethylene Topic 23.22, Chapter Twenty-Three References 25. The Control of Flowering Topic 25.1, Contrasting the Characteristics of Juvenile and Adult Phases of English Ivy (Hedera helix) and Maize (Zea mays) Topic 25.2, Regulation of Juvenility by the TEOPOD (TP) Genes in Maize Topic 25.3, Flowering of Juvenile Meristems Grafted to Adult Plants Topic 25.4, Characteristics of the Phase-Shifting Response in Circadian Rhythms Topic 25.5, Support for the Role of Blue-Light Regulation of Circadian Rhythms Topic 25.6, Genes That Control Flowering Time Topic 25.7, Regulation of Flowering in Canterbury Bells by Both Photoperiod and Vernalization Topic 25.8, The Self-Propagating Nature of the Floral Stimulus Topic 25.9, Examples of Floral Induction by Gibberellins in Plants with Different Environmental Requirements for Flowering Topic 25.10, The Effects of Two Different Gibberellins on Flowering (Spike Length) and Elongation (Stem Length) Topic 25.11, The Contrasting Effects of Phytochromes A and B on Flowering Topic 25.12, A Gene That Regulates the Floral Stimulus in Maize Topic 25.13, Chapter Twenty-Five References 26. Responses and Adaptations to Abiotic Stress Topic 26.1, Stomatal Conductance and Yields of Irrigated Crops Topic 26.2, Membrane Lipids and Low Temperatures Topic 26.3, Ice Formation in Higher-Plant Cells Topic 26.4, Water-Deficit-Regulated ABA Signaling and Stomatal Closure Topic 26.5, Genetic and Physiological Adaptations Required for Zinc Hyperaccumulation Topic 26.6, Cellular and Whole Plant Responses to Salinity Stress Topic 26.7, Signaling during Cold Acclimation Regulates Genes That Are Expressed in Response to Low Temperature and Enhances Freezing Tolerance Topic 26.8, Chapter Twenty-Six References