5e.plantphys.net —
A Companion to Plant Physiology, Fifth Edition
by Lincoln Taiz and Eduardo Zeiger
Topics
1. Plant Cells
Topic 1.1, Model Organisms
Topic 1.2, The Plant Kingdom
Topic 1.3, Flower Structure and the Angiosperm Life Cycle
Topic 1.4, Plant Tissue Systems: Dermal, Ground, and Vascular
Topic 1.5, The Structures of Chloroplast Glycosylglycerides
Topic 1.6, A Model for the Structure of Nuclear Pores
Topic 1.7, The Proteins Involved in Nuclear Import and Export
Topic 1.8, Protein Signals Used to Sort Proteins to their Destinations
Topic 1.9, SNAREs, Rabs, and Coat Proteins Mediate Vesicle Formation, Fission, and Fusion
Topic 1.10, ER Exit Sites (ERES) and Golgi Bodies Are Interconnected
Topic 1.11, Specialized Vacuoles in Plant Cells
Topic 1.12, Actin-Binding Proteins Regulate Microfilament Growth
Topic 1.13, Kinesins Are Associated with Other Microtubules and Chromatin
Topic 1.14, Chapter One References
2. Genome Organization and Gene Expression
Topic 2.1, Recombination Mapping and Gene Cloning
Topic 2.2, Transposon Tagging
3. Water and Plant Cells
Topic 3.1, Calculating Capillary Rise
Topic 3.2, Calculating Half-Times of Diffusion
Topic 3.3, Alternative Conventions for Components of Water Potential
Topic 3.4, Temperature and Water Potential
Topic 3.5, Can Negative Turgor Pressures Exist in Living Cells?
Topic 3.6, Measuring Water Potential
Topic 3.7, The Matric Potential
Topic 3.8, Wilting and Plasmolysis
Topic 3.9, Understanding Hydraulic Conductivity
Topic 3.10, Chapter Three References
4. Water Balance of Plants
Topic 4.1, Irrigation
Topic 4.2, Physical Properties of Soils
Topic 4.3, Calculating Velocities of Water Movement in the Xylem and in Living Cells
Topic 4.4, Leaf Transpiration and Water Vapor Gradients
Topic 4.5, Chapter Four References
5. Mineral Nutrition
Topic 5.1, Symptoms of Deficiency in Essential Minerals - Wade Berry, UCLA
Topic 5.2, Observing Roots below Ground
Topic 5.3, Chapter Five References
6. Solute Transport
Topic 6.1, Relating the Membrane Potential to the Distribution of Several Ions across the Membrane: The Goldman Equation
Topic 6.2, Patch Clamp Studies in Plant Cells
Topic 6.3, Chemiosmosis in Action
Topic 6.4, Kinetic Analysis of Multiple Transporter Systems
Topic 6.5, ABC Transporters in Plants
Topic 6.6, Transport Studies with Isolated Vacuoles and Membrane Vesicles
Topic 6.7, Chapter Six References
7. Photosynthesis: The Light Reactions
Topic 7.1, Principles of Spectrophotometry
Topic 7.2, The Distribution of Chlorophylls and Other Photosynthetic Pigments
Topic 7.3, Quantum Yield
Topic 7.4, Antagonistic Effects of Light on Cytochrome Oxidation
Topic 7.5, Structures of Two Bacterial Reaction Centers
Topic 7.6, Midpoint Potentials and Redox Reactions
Topic 7.7, Oxygen Evolution
Topic 7.8, Photosystem I
Topic 7.9, ATP Synthase
Topic 7.10, Mode of Action of Some Herbicides
Topic 7.11, Chlorophyll Biosynthesis
Topic 7.12, Chapter Seven References
8. Photosynthesis: The Carbon Reactions
Topic 8.1, CO2 Pumps
Topic 8.2, How the Calvin–Benson Cycle Was Elucidated
Topic 8.3, Rubisco: A Model Enzyme for Studying Structure and Function
Topic 8.4, Energy Demands for Photosynthesis in Land Plants
Topic 8.5, Rubisco Activase
Topic 8.6, Thioredoxins
Topic 8.7, Operation of the C2 Oxidative Photosynthetic Carbon Cycle
Topic 8.8, Carbon Dioxide: Some Important Physicochemical Properties
Topic 8.9, Three Variations of C4 Metabolism
Topic 8.10, Single-Cell C4 Photosynthesis
Topic 8.11, Photorespiration in CAM plants
Topic 8.12, Glossary of Carbohydrate Biochemistry
Topic 8.13, Starch Architecture
Topic 8.14, Fructans
Topic 8.15, Chloroplast Phosphate Translocators
Topic 8.16, Chapter Eight References
9. Photosynthesis: Physiological and Ecological Considerations
Topic 9.1, Working with Light
Topic 9.2, Heat Dissipation from Leaves: The Bowen Ratio
Topic 9.3, The Geographic Distributions of C3 and C4 Plants
Topic 9.4, Calculating Important Parameters in Leaf Gas Exchange
Topic 9.5, Prehistoric Changes in Atmospheric CO2
Topic 9.6, Projected Future Increases in Atmospheric CO2
Topic 9.7, Using Carbon Isotopes to Detect Adulteration in Foods
Topic 9.8, Reconstruction of the Expansion of C4 Taxa
Topic 9.9, Chapter Nine References
10. Translocation in the Phloem
Topic 10.1, Sieve Elements as the Transport Cells between Sources and Sinks - Susan Dunford, University of Cincinnati
Topic 10.2, An Additional Mechanism for Blocking Wounded Sieve Elements in the Legume Family - Susan Dunford, University of Cincinnati
Topic 10.3, Sampling Phloem Sap - Susan Dunford, University of Cincinnati
Topic 10.4, Nitrogen Transport in the Phloem - Susan Dunford, University of Cincinnati
Topic 10.5, Monitoring Traffic on the Sugar Freeway: Sugar Transport Rates in the Phloem - Susan Dunford, University of Cincinnati
Topic 10.6, Alternative Views of Pressure Gradient in Sieve Elements: Large or Small Gradients? - Susan Dunford, University of Cincinnati
Topic 10.7, Experiments on Phloem Loading - Susan Dunford, University of Cincinnati
Topic 10.8, Experiments on Phloem Unloading - Susan Dunford, University of Cincinnati
Topic 10.9, Allocation in Source Leaves: The Balance between Starch and Sucrose Synthesis - Susan Dunford, University of Cincinnati
Topic 10.10, Partitioning: The Role of Sucrose-Metabolizing Enzymes in Sinks
Topic 10.11, Possible Mechanisms Linking Sink Demand and Photosynthetic Rate in Starch Storers - Susan Dunford, University of Cincinnati
Topic 10.12, Proteins and RNAs: Signal Molecules in the Phloem
Topic 10.13, Chapter Ten References - Susan Dunford, University of Cincinnati
11. Respiration and Lipid Metabolism
Topic 11.1, Isolation of Mitochondria - Ian M. Møller, Aarhus University, Denmark; Allan G. Rasmusson, Lund University, Sweden
Topic 11.2, The Q-Cycle Explains How Complex III Pumps Protons across the Inner Mitochondrial Membrane - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark
Topic 11.3, Multiple Energy Conservation Bypasses in Oxidative Phosphorylation of Plant Mitochondria - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark
Topic 11.4, FoF1-ATP Synthases: The World′s Smallest Rotary Motors - Lincoln Taiz, University of California, Santa Cruz, California, USA
Topic 11.5, Transport Into and Out of Plant Mitochondria - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark
Topic 11.6, The Genetic System in Plant Mitochondria Has Several Special Features - Allan G. Rasmusson, Lund University, Sweden; Ian M. Møller, Aarhus University, Denmark
Topic 11.7, Does Respiration Reduce Crop Yields? - James N. Siedow, Duke University, North Carolina, USA; Ian M. Møller, Aarhus University, Denmark; Allan G. Rasmusson, Lund University, Sweden
Topic 11.8, The Lipid Composition of Membranes Affects the Cell Biology and Physiology of Plants - John Browse, Washington State University
Topic 11.9, Utilization of Oil Reserves in Cotyledons - John Browse, Washington State University
Topic 11.10, Chapter 11 References
12. Assimilation of Mineral Nutrients
Topic 12.1, Development of a Root Nodule
Topic 12.2, Measurement of Nitrogen Fixation
Topic 12.3, The Synthesis of Methionine
Topic 12.4, Oxygenases
Topic 12.5, Chapter Twelve References
13. Secondary Metabolites and Plant Defense
Topic 13.1, Cutin, Waxes, and Suberin
Topic 13.2, Structure of Various Triterpenes
Topic 13.3, The Shikimic Acid Pathway
Topic 13.4, Detailed Chemical Structure of a Portion of a Lignin Molecule
Topic 13.5, Chapter Thirteen References
15. Cell Walls: Structure, Biogenesis, and Expansion
Topic 15.1, Plant Cell Walls Play a Major Role in Carbon Flow through Ecosystems
Topic 15.2, Terminology for Polysaccharide Chemistry
Topic 15.3, Molecular Model for the Synthesis of Cellulose and Other Wall Polysaccharides That Consist of a Disaccharide Repeat
Topic 15.4, Matrix Components of the Cell Wall
Topic 15.5, The Mechanical Properties of Cell Walls: Studies With Nitella
Topic 15.6, Wall Degradation and Plant Defense
Topic 15.7, Structure of Biologically Active Oligosaccharins
Topic 15.8, Glucanases and Other Hydrolytic Enzymes May Modify the Matrix
Topic 15.9, Chapter Fifteen References
16. Growth and Development
Topic 16.1, Embryonic Dormancy
Topic 16.2, Rice Embryogenesis
Topic 16.3, Polarity of Fucus Zygotes
Topic 16.4, Azolla Root Development
Topic 16.5, Class III HD-Zip Transcription Factors Promote Adaxial Development through a microRNA-Sensitive Mechanism
Topic 16.6, During Senescence Photoactive Chlorophyllide Is Converted into a Colorless Chlorophyll Catabolite
Topic 16.7, Chapter Sixteen References
17. Phytochrome and Light Control of Plant Development
Topic 17.1, Mougeotia: A Chloroplast with a Twist
Topic 17.2, Phytochrome and High-Irradiance Responses
Topic 17.3, The Origins of Phytochrome as a Bacterial Two-Component Receptor
Topic 17.4, Profiling Gene Expression in Plants
Topic 17.5, Two-Hybrid Screens and Co-immunoprecipitation
Topic 17.6, Phytochrome Effects on Ion Fluxes
Topic 17.7, Microarray Analysis of Shade Avoidance
Topic 17.8, Chapter Seventeen References
18. Blue-Light Responses: Morphogenesis and Stomatal Movements
Topic 18.1, Blue-Light Sensing and Light Gradients
Topic 18.2, Guard Cell Osmoregulation and a Blue Light-Activated Metabolic Switch
Topic 18.3, The Coleoptile Chloroplast
Topic 18.4, Phytochrome-Mediated Responses in Stomata
Topic 18.5, Chapter Eighteen References
20. Gibberellins: Regulators of Plant Height and Seed Germination
Topic 20.1, Structures of Some Important Gibberellins and Their Precursors, Derivatives, and Inhibitors of Gibberellin Biosynthesis - Valerie Sponsel, Biology Department, University of Texas, San Antonio, Texas, USA
Topic 20.2, Commercial Uses of Gibberellins - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA
Topic 20.3, Gibberellin Biosynthesis - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA
Topic 20.4, Gas Chromatography—Mass Spectrometry of Gibberellins - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA
Topic 20.5, Environmental Control of Gibberellin Biosynthesis - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA
Topic 20.6, Auxin Can Regulate Gibberellin Biosynthesis - Jocelyn A. Ozga and Dennis M. Reinecke, Plant BioSystems Group, Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada T6G 2P5
Topic 20.7, Negative Regulators of GA Response - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA
Topic 20.8, Effects of GAs on Flowering - Valerie Sponsel, Biology Department, University of Texas, San Antonio, TX, USA
Topic 20.9, DELLA Proteins as Integrators of Multiple Signals - Stephen G. Thomas, Rothamsted Research, Harpenden, United Kingdom
Topic 20.10, Chapter Twenty References
21. Cytokinins: Regulators of Cell Division
Topic 21.1, Cultured Cells Can Acquire the Ability to Synthesize Cytokinins
Topic 21.2, Structures of Some Naturally Occurring Cytokinins
Topic 21.3, Various Methods Are Used to Detect and Identify Cytokinins
Topic 21.4, The Biologically Active Form of Cytokinin Is the Free Base
Topic 21.5, Cytokinins Are Also Present in Some tRNAs in Animal and Plant Cells
Topic 21.6, The Structures of Opines
Topic 21.7, The Ti Plasmid and Plant Genetic Engineering
Topic 21.8, Phylogenetic Tree of IPT genes
Topic 21.9, A Root-Derived Hormone, Strigolactone, Is Involved in the Suppression of Branching in Shoots
Topic 21.10, Cytokinin Can Promote Light-Mediated Development
Topic 21.11, Cytokinins Promote Cell Expansion and Greening in Cotyledons
Topic 21.12, Cytokinins Interact with Elements of the Circadian Clock
Topic 21.13, Chapter Twenty-One References
22. Ethylene: The Gaseous Hormone
Topic 22.1, Ethylene in the Environment Arises Biotically and Abiotically
Topic 22.2, Ethylene Readily Undergoes Oxidation
Topic 22.3, Ethylene Can Be Measured by Gas Chromatography
Topic 22.4, Cloning of the Gene That Encodes ACC Synthase
Topic 22.5, Cloning of the Gene That Encodes ACC Oxidase
Topic 22.6, Ethylene Binding to ETR1 and Seedling Response to Ethylene
Topic 22.7, Conservation of Ethylene Signaling Components in Other Plant Species
Topic 22.8, ACC Synthase Gene Expression and Biotechnology
Topic 22.9, The hookless Mutation Alters the Pattern of Auxin Gene Expression
Topic 22.10, Ethylene Inhibits the Formation of Nitrogen-Fixing Root Nodules in Legumes
Topic 22.11, Ethylene Biosynthesis Can Be Blocked with Anti-Sense DNA
Topic 22.12, Abscission and the Dawn of Agriculture
Topic 22.13, Specific Inhibitors of Ethylene Biosynthesis Are Used Commercially to Preserve Cut Flowers
Topic 22.14, Chapter Twenty-Two References
23. Abscisic Acid: A Seed Maturation and Stress-Response Hormone
Topic 23.1, The Structure Of Lunularic Acid from Liverworts
Topic 23.2, ABA May Be an Ancient Stress Signal
Topic 23.3, Structural Requirements for Biological Activity of Abscisic Acid
Topic 23.4, The Bioassay of ABA
Topic 23.5, Evidence for Both Extracellular and Intracellular ABA Receptors
Topic 23.6, The Existence of G Protein-Coupled ABA Receptors Is Still Unresolved
Topic 23.7, The Yeast Two-Hybrid System
Topic 23.8, Yellow Cameleon: A Noninvasive Tool for Measuring Intracellular Calcium
Topic 23.9, Phosphatidic Acid May Stimulate Sphingosine-1-Phosphate Production
Topic 23.10, The ABA Signal Transduction Pathway Includes Several Protein Kinases
Topic 23.11, The ERA1 and ABH Genes Code for Negative Regulators of the The ABA Response
Topic 23.12, Promoter Elements That Regulate ABA Induction of Gene Expression
Topic 23.13, Regulatory Proteins Implicated in ABA-Stimulated Gene Transcription
Topic 23.14, ABA Gene Expression Can Also Be Regulated by mRNA Processing and Stability
Topic 23.15, ABA May Play a Role in Plant Pathogen Responses
Topic 23.16, Proteins Required for Desiccation Tolerance
Topic 23.17, The Types of Coat-Imposed Seed Dormancy
Topic 23.18, Types of Seed Dormancy and the Roles of Environmental Factors
Topic 23.19, The Longevity of Seeds
Topic 23.20, Genetic Mapping Of Dormancy: Quantitative Trait Locus (QTL) Scoring of Vegetative Dormancy Combined with a Candidate Gene Approach
Topic 23.21, ABA-Induced Senescence and Ethylene
Topic 23.22, Chapter Twenty-Three References
25. The Control of Flowering
Topic 25.1, Contrasting the Characteristics of Juvenile and Adult Phases of English Ivy (Hedera helix) and Maize (Zea mays)
Topic 25.2, Regulation of Juvenility by the TEOPOD (TP) Genes in Maize
Topic 25.3, Flowering of Juvenile Meristems Grafted to Adult Plants
Topic 25.4, Characteristics of the Phase-Shifting Response in Circadian Rhythms
Topic 25.5, Support for the Role of Blue-Light Regulation of Circadian Rhythms
Topic 25.6, Genes That Control Flowering Time
Topic 25.7, Regulation of Flowering in Canterbury Bells by Both Photoperiod and Vernalization
Topic 25.8, The Self-Propagating Nature of the Floral Stimulus
Topic 25.9, Examples of Floral Induction by Gibberellins in Plants with Different Environmental Requirements for Flowering
Topic 25.10, The Effects of Two Different Gibberellins on Flowering (Spike Length) and Elongation (Stem Length)
Topic 25.11, The Contrasting Effects of Phytochromes A and B on Flowering
Topic 25.12, A Gene That Regulates the Floral Stimulus in Maize
Topic 25.13, Chapter Twenty-Five References
26. Responses and Adaptations to Abiotic Stress
Topic 26.1, Stomatal Conductance and Yields of Irrigated Crops
Topic 26.2, Membrane Lipids and Low Temperatures
Topic 26.3, Ice Formation in Higher-Plant Cells
Topic 26.4, Water-Deficit-Regulated ABA Signaling and Stomatal Closure
Topic 26.5, Genetic and Physiological Adaptations Required for Zinc Hyperaccumulation
Topic 26.6, Cellular and Whole Plant Responses to Salinity Stress
Topic 26.7, Signaling during Cold Acclimation Regulates Genes That Are Expressed in Response to Low Temperature and Enhances Freezing Tolerance
Topic 26.8, Chapter Twenty-Six References